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    Some bacteria are suffocating sea stars, turning the animals to goo

    The mysterious culprit behind a deadly sea star disease is not an infection, as scientists once thought.
    Instead, multiple types of bacteria living within millimeters of sea stars’ skin deplete oxygen from the water and effectively suffocate the animals, researchers report January 6 in Frontiers in Microbiology. Such microbes thrive when there are high levels of organic matter in warm water and create a low oxygen environment that can make sea stars melt in a puddle of slime.
    Sea star wasting disease — which causes lethal symptoms like decaying tissue and loss of limbs — first gained notoriety in 2013 when sea stars living off the U.S. Pacific Coast died in massive numbers. Outbreaks of the disease had also occurred before 2013, but never at such a large scale.
    Scientists suspected that a virus or bacterium might be making sea stars sick. That hypothesis was supported in a 2014 study that found unhealthy animals may have been infected by a virus (SN: 11/19/14). But the link vanished when subsequent studies found no relationship between the virus and dying sea stars, leaving researchers perplexed (SN: 5/5/16). 

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    The new finding that a boom of nutrient-loving bacteria can drain oxygen from the water and cause wasting disease “challenges us to think that there might not always be a single pathogen or a smoking gun,” says Melissa Pespeni, a biologist at the University of Vermont in Burlington who was not involved in the work. Such a complex environmental scenario for killing sea stars “is a new kind of idea for [disease] transmission.”  
    There were certainly many red herrings during the hunt for why sea stars along North America’s Pacific Coast were melting into goo, says Ian Hewson, a marine biologist at Cornell University. In addition to the original hypothesis of a viral cause for sea star wasting disease — which Hewson’s team reported in 2014 in Proceedings of the National Academy of Sciences but later disproved — he and colleagues analyzed a range of other explanations, from differences in water temperature to exposing the animals to bacteria. But nothing reliably triggered wasting.   
    Then the researchers examined the types of bacteria living with healthy sea stars compared with those living among the animals with wasting disease. “That was when we had our aha moment,” says Hewson.
    Not all sea stars are susceptible to sea star wasting disease. Species that have more structures on their surface, and therefore more surface area for bacteria to deplete oxygen, appear more likely to get severely sick compared with flatter sea stars. In this photo, an ochre sea star (Pisaster ochraceus) succumbs to the disease in Davenport, Calif., in June 2018.Ian Hewson
    Types of bacteria known as copiotrophs, which thrive in environments with lots of nutrients, were present around the sea stars at higher levels than normal either shortly before the animals developed lesions or as they did so, Hewson and colleagues found. Bacterial species that survive only in environments with little to no oxygen were also thriving. In the lab, the sea stars began wasting when the researchers added phytoplankton or a common bacterial-growth ingredient to the warm water tubs those microbes and sea stars were living in.  
    Experimentally depleting oxygen from the water had a similar effect, causing lesions in 75 percent of the animals, while none succumbed in the control group. Sea stars breathe by diffusing oxygen over small external projections called skin gills, so the lack of oxygen in the wake of flourishing copiotrophs leaves sea stars struggling for air, the data show. It’s unclear how the animals degrade in low oxygen conditions, but it could be due to massive cell death.
    Although the disease isn’t caused by a contagious pathogen, it is transmissible in the sense that dying sea stars generate more organic matter that spur bacteria to grow on healthy animals nearby. “It’s a bit of a snowball effect,” Hewson says.
    The team also analyzed tissues from sea stars that had succumbed in the 2013 mass die-off — which followed a large algal bloom on the U.S. West Coast — to see if such environmental conditions might explain that outbreak. In fast-growing appendages that help them move, the sea stars that perished had high amounts of a form of nitrogen found in low oxygen conditions — a sign that those animals may have died from a lack of oxygen.
    The problem may get worse with climate change, Hewson says. “Warmer waters can’t have as much oxygen [compared with colder water] just by physics alone.” Bacteria, including copiotrophs, also flourish in warm water.  
    But pinpointing the likely cause could help experts better treat sick sea stars in the lab, Hewson says. Some techniques include increasing the oxygen levels in a water tank to make the gas more easily available to sea stars or getting rid of extra organic matter with ultraviolet light or water exchange.
    “There’s still a lot to figure out with this disease, but I think [this new study] gets us a long way to understanding how it comes about,” Pespeni says. More

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    How to train a robot (using AI and supercomputers)

    Computer scientists developed a deep learning method to create realistic objects for virtual environments that can be used to train robots. The researchers used TACC’s Maverick2 supercomputer to train the generative adversarial network. The network is the first that can produce colored point clouds with fine details at multiple resolutions. More

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    Counting elephants from space

    Scientists have successfully used satellite cameras coupled with deep learning to count animals in complex geographical landscapes, taking conservationists an important step forward in monitoring populations of endangered species. More

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    One-dimensional quantum nanowires fertile ground for Majorana zero modes

    Quantum nanowires — which have length but no width or height-provide a unique environment for the formation and detection of a quasiparticle known as a Majorana zero mode.
    A new UNSW-led study overcomes previous difficulty detecting the Majorana zero mode, and produces a significant improvement in device reproducibility.
    Potential applications for Majorana zero modes include fault-resistant topological quantum computers, and topological superconductivity.
    MAJORANA FERMIONS IN 1D WIRES
    A Majorana fermion is a composite particle that is its own antiparticle.

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    Antimatter explainer: Every fundamental particle has a corresponding antimatter particle, with the same mass but opposite electrical charge. For example, the antiparticle of an electron (charge -1) is a positron (charge +1)
    Such unusual particle’s interest academically and commercially comes from their potential use in a topological quantum computer, predicted to be immune to the decoherence that randomises the precious quantum information.
    Majorana zero modes can be created in quantum wires made from special materials in which there is a strong coupling between their electrical and magnetic properties.
    In particular, Majorana zero modes can be created in one-dimensional semiconductors (such as semiconductor nanowires) when coupled with a superconductor.
    In a one-dimensional nanowire, whose dimensions perpendicular to length are small enough not to allow any movement of subatomic particles, quantum effects predominate.

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    NEW METHOD FOR DETECTING NECESSARY SPIN-ORBIT GAP
    Majorana fermions, which are their own antiparticle, have been theorised since 1937, but have only been experimentally observed in the last decade. The Majorana fermion’s ‘immunity’ to decoherence provides potential use for fault-tolerant quantum computing.
    One-dimensional semiconductor systems with strong spin-orbit interaction are attracting great attention due to potential applications in topological quantum computing.
    The magnetic ‘spin’ of an electron is like a little bar magnet, whose orientation can be set with an applied magnetic field.
    In materials with a ‘spin-orbit interaction’ the spin of an electron is determined by the direction of motion, even at zero magnetic field. This allows for all electrical manipulation of magnetic quantum properties.
    Applying a magnetic field to such a system can open an energy gap such that forward -moving electrons all have the same spin polarisation, and backward-moving electrons have the opposite polarisation. This ‘spin-gap’ is a pre-requisite for the formation of Majorana zero modes.
    Despite intense experimental work, it has proven extremely difficult to unambiguously detect this spin-gap in semiconductor nanowires, since the spin-gap’s characteristic signature (a dip in its conductance plateau when a magnetic field is applied) is very hard to distinguish from unavoidable the background disorder in nanowires.
    The new study finds a new, unambiguous signature for the spin-orbit gap that is impervious to the disorder effects plaguing previous studies.
    “This signature will become the de-facto standard for detecting spin-gaps in the future,” says lead author Dr Karina Hudson.
    REPRODUCIBILITY
    The use of Majorana zero modes in a scalable quantum computer faces an additional challenge due to the random disorder and imperfections in the self-assembled nanowires that host the MZM.
    It has previously been almost impossible to fabricate reproducible devices, with only about 10% of devices functioning within desired parameters.
    The latest UNSW results show a significant improvement, with reproducible results across six devices based on three different starting wafers.
    “This work opens a new route to making completely reproducible devices,” says corresponding author Prof Alex Hamilton UNSW). More