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    New computer analysis hints volcanism killed the dinosaurs, not an asteroid

    For decades, scientists have vigorously debated whether an asteroid strike or massive volcanic eruptions ended the reign of the dinosaurs 66 million years ago. Roughly three-quarters of all life on Earth, including all nonbird dinosaurs, went extinct at that time, putting a dramatic end to the Cretaceous Period.

    Now, researchers have devised a new way to identify the true dino killer: Let computers take a crack at it.

    The result of that computational effort suggests that massive bursts of gas produced by the Deccan Traps eruptions were solely capable of causing the extinction event, the team reports in the Sept. 29 Science. Those eruptions, which lasted roughly a million years, spewed massive amounts of gas-ridden lava across what’s now western India.

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    “Rather than come at it from the perspective of ‘let’s blame the volcanoes and explain why’ or ‘let’s blame asteroids and explain why,’” the goal was to have as little human input or bias in the process as possible, says Dartmouth computational geologist Alexander Cox.

    The idea was to work backward using evidence from the scene of the crime. Scientists do have a smoking gun: Cores drilled into deep-ocean sediments contain geologic data pointing to deadly bursts of gas to the atmosphere, particularly planet-warming carbon dioxide and ocean-acidifying sulfur dioxide.

    But such gases could have come from the asteroid strike, as it incinerated rocks on the planet’s surface, Cox says, or from the Deccan Traps eruptions.

    Previous efforts to understand the source of the gases have focused on timing, examining pulses of lava emplacement during the Deccan Traps eruptions, Cox says (SN: 2/21/19). But “we only have best guesses about how much initial gas was in [the lava].” Estimated carbon dioxide concentrations in the lava, for example, vary by an order of magnitude, he says. “So that’s why we approached this from a gas-emissions perspective rather than a lava-flow perspective.”

    Vast hardened lava flows, known as the Deccan Traps, cover much of what’s now western India. The lava is the remnant of a massive volcanic event about 66 million years ago. New computer analyses suggest that gases emitted during this event were enough to shift Earth’s temperature and may have led to the demise of nonbird dinosaurs.Baajhan at English Wikipedia

    To disentangle the relative contributions of each potential culprit, Cox and Dartmouth geologist C. Brenhin Keller used a statistical model called a Markov chain Monte Carlo approach. That approach systematically considers the probability of different scenarios of gas emissions from the different sources, converging toward possible solutions as the results of the simulations move closer and closer to geologic observations.

    What made the researchers’ approach particularly powerful is that they harnessed 128 different processors to run scenarios in parallel, Cox says. “All the processors then compared how they’re doing at the end of every model run, like classmates comparing answers.” That parallel computing meant that computations that would otherwise have taken a year took only a few days.

    The observations Cox and Keller used were data collected from three cores drilled into deep-sea sediments, each spanning 67 million to 65 million years ago. In those sediments are foraminifera, ocean-dwelling microorganisms whose carbonate shells contain different isotopes, or forms, of carbon and oxygen. The shells’ chemical makeup records the ocean chemistry at the time of their formation, and so can be used as a proxy to infer past global temperatures as well as how many creatures were thriving in the oceans, and how much carbon was moving between the atmosphere, ocean and land (SN: 1/16/20).

    The computer simulations determined that the amount of gas spewed into the atmosphere from the volcanism alone was enough to account for the changes in temperature and carbon cycling determined from the foraminifera data in the drill cores.

    As for the asteroid strike, which formed the massive Chicxulub crater in what’s now Mexico, it probably did not produce a big spike in carbon dioxide or sulfur dioxide, the analysis found (SN: 1/25/17).

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    But many scientists are not convinced that these findings provide the ultimate answer to this long-standing, complex question. “It’s an elegant way to address this problem,” says Sierra Petersen, a geochemist at the University of Michigan in Ann Arbor. Modeling in this way “gives the freedom to find the consensus solution, taking multiple proxy records into account. However, like any model, output depends on input.”

    Petersen notes that foraminifera shells are not an ideal proxy for ancient temperatures: The oxygen isotope ratios in foraminifera shells can change not only due to temperature but also due to seawater composition. Different temperature proxies would likely lead to different patterns of gas release reproduced in models, Petersen says.

    As for the mass extinction culprit, she adds, “it’s a bit of a leap to say that this study shows the impact didn’t cause the extinction. I think what they show is that the impact was likely not associated with a large [gas] release.” But the asteroid, she says, still could have had other deadly impacts on the planet’s environment.  

    Indeed, “the Chicxulub impact led to many devastating effects beyond the carbon dioxide and sulfur dioxide emissions explored in this study,” says Clay Tabor, a paleoclimatologist at the University of Connecticut in Storrs.

    Those include massive clouds of soot and dust kicked up from pulverized rocks due to the impact, he says. Previous research has suggested this dust may have dimmed the amount of sunlight reaching the Earth by as much as 20 percent, inducing a frigid winter that swiftly killed off plants and destroyed habitats (SN: 7/17/20).

    What’s more, the new study suggests that the asteroid impact didn’t have a long-term effect on the planet’s carbon cycle, based on carbon isotope data recorded in the foraminifera shells for the million years after the extinction. But there was an abrupt drop in the abundance of those creatures corresponding to the time of the impact, Tabor says. “The rapid rate of change caused by the Chicxulub impact was likely responsible for its effects on life.”

    “Many geochemical records spanning the [extinction event], as well as this modeling work, cannot capture well the rates of change associated with the Chicxulub impact,” he says. “The impact may have released significantly less CO2 and SO2 than the Deccan Traps, but it did so almost instantaneously.” So even if the asteroid impact released fewer gases overall, Tabor says, the speediness of that release could have been devastating all the same. More

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    New JWST images suggest our understanding of the cosmos is flawed

    The greatest puzzle in cosmology just got even more puzzling.

    Images from the James Webb Space Telescope have confirmed that the universe appears to be expanding significantly faster than it should be, researchers report in a study accepted in the Astrophysical Journal. The observation is in conflict with an esteemed theory, the standard model of cosmology, that describes how the universe has evolved since the first moments after the Big Bang.

    The conflict comes down to calculations of the Hubble constant, a number that describes how fast everything in the universe is flying apart. One calculation, based on Planck satellite observations of the oldest light in the universe in conjunction with the standard model of cosmology, suggests the Hubble constant is 67.4 kilometers per second per megaparsec (a megaparsec is about 3 million light-years). Hubble Space Telescope images of stars at various distances from us provide a fundamentally incompatible value — 73 kilometers per second per megaparsec.

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    The discrepancy is known as the Hubble tension, and new JWST data hasn’t done anything to ease it (SN: 7/30/19). The telescope took images of the same stars as the Hubble telescope and calculated a very similar Hubble constant. Although the Planck number disagrees from the Hubble telescope and JWST number by less than 10 percent, the discrepancy in the measurements implies that there’s something terribly wrong with our understanding of the universe. Unless an error turns up in one of the measurements, it will take strange new physics to explain the tension.

    “Papers in the literature over the last 10 years have invoked anything from weird dark matter to weird dark energy, to another [exotic] particle, to a magnetic field in the early universe to a new field, all kinds of things” to explain the Hubble tension, says cosmologist Adam Riess of Johns Hopkins University.

    Some of these explanations “look semi-successful, some of them look like failures, some of them would cause other problems,” he says. Developing a theory that might resolve the tension “is still very much in the skunkworks [or extremely speculative] stage of trying to understand what [the tension] could mean.”

    JWST looks to the stars to calculate the Hubble constant

    With the Hubble telescope and JWST, astronomers calculate the Hubble constant by observing flashing stars known as Cepheid variables. The stars flare up periodically at rates that indicate how much light they’re putting out. Comparing a star’s brightness in telescope images with its expected brightness, based on the flare-up rates, gives a measure of the distance to the stars. Shifts in the color of the light coming from the stars reveal how fast they’re moving. Combining distance and speed observations of Cepheid stars leads to a measure of the expansion of the universe.

    But Cepheid variable stars tend to sit deep inside galaxies, surrounded by crowds of other stars. That can make it difficult to get good measurements of the Cepheids’ speeds and locations. One simple resolution for the Hubble tension could have been that the Hubble telescope measurements were simply off.

    Enter JWST, which can peer through the stellar crowds to clearly make out the color and brightness of Cepheid variables. The higher-resolution JWST images provide data with dramatically lower uncertainties and reduced confusion with nearby stars than the Hubble telescope could manage. The result: The Hubble telescope measurements have been right all along, Riess and colleagues report in their new paper.   

    This study alone isn’t enough to convince astronomer Wendy Freedman of the University of Chicago. The two galaxies studied are comparatively close to us, on cosmic scales, with the farthest one about 75 million light-years away, she notes. The relative proximity makes it easier to pick out the Cepheids from the stellar crowds. Freedman suspects it will be harder to distinguish Cepheids from the crowds of surrounding stars in more distant galaxies, even with JWST.

    “The problem is only going to be worse,” Freedman says. “Because the resolution, it gets worse as you go to a higher distance.” For very distant galaxies, she suspects, stars could appear too close together to pick out the Cepheids from neighboring stars, even for JWST. As a result,  Freedman says that Riess’ confirmation of the higher Hubble constant may crumble with analysis of more distant Cepheids.

    Patterns in this Planck satellite image of the cosmic microwave background, the oldest light in the universe, suggest that the universe is expanding at 67.4 kilometers per second per megaparsec, according to the standard model of cosmology.ESA and the Planck Collaboration

    JWST’s images leave the Hubble tension untouched

    Hints that the measurements might hold up at larger distances arose in a Sept. 12 presentation at a conference in Baltimore dedicated to the first year of JWST science. Riess showed preliminary Cepheid data from four more galaxies. One of them is 140 million light-years away — among the most distant galaxies in the Hubble telescope Cepheid studies. JWST data from those stars also line up with the Hubble telescope measurements. Although still awaiting peer review, the images strongly suggest that the JWST has indeed overcome the uncertainties that resulted when light from Cepheids got mixed up with light from nearby stars in the lower resolution Hubble telescope images.

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    University of Cambridge astrophysicist George Efstathiou, who was not involved in the study, is both convinced that Riess has gotten the measurements right and confounded by the implications. “When they showed me all of that [data],” Efstathiou says, “my reaction was, ‘Well, you know, I’m stumped.’”

    Efstathiou is a member of the Planck satellite collaboration, which studied the oldest light in the universe, called the cosmic microwave background, and found the lower value for the expansion of the universe. The satellite’s calculation is based on images of the patterns in light from the early universe. Together with the standard model of cosmology, the images show that the universe is expanding with a Hubble constant that’s lower than the JWST measurement by about 5.6 kilometers per second per megaparsec.

    As it stands, there doesn’t seem to be anything wrong with the Planck measurement of the Hubble constant or with the JWST observations. The tension between the measurements points a finger at the standard model of cosmology as the problem. But the standard model also appears to be unimpeachable; it’s withstood numerous other challenges without breaking down. The model came about in part due to the discovery of the accelerating expansion of the universe, which earned Riess and others a Nobel Prize in physics (SN: 10/4/11). The revelation was a key piece in shaping the model to include dark matter, dark energy and other factors, making it the simplest theory that can accurately describe the universe.

    Now, though, Riess’ Cepheid-based studies of the Hubble constant show that there’s still more to learn.

    “This is a crack, or a surprise that doesn’t fit,” Riess says. “It’s left us more in a kind of confused or purgatory state.” The implication, he says, is “there’s a problem with the standard model. You can revise it, but we don’t know how to revise it, which direction or in what way.”

    People shouldn’t mistake the tension over the Hubble tension as despair. “It’s more of an opportunity to learn something about the universe with these telescopes,” Riess says.

    One possibility is completely new physics.

    “If there’s new physics, that’d be fun,” Freedman says. “We’d all like to see something new and interesting…. Either way, I think it’s going to be an exciting result — either confirming the [standard] model or showing that there’s something still in the model that’s missing.” More

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    Sperm swimming is caused by the same patterns that are believed to dictate zebra stripes

    Patterns of chemical interactions are thought to create patterns in nature such as stripes and spots. This new study shows that the mathematical basis of these patterns also governs how sperm tail moves.
    The findings, published today in Nature Communications, reveal that flagella movement of, for example, sperm tails and cilia, follow the same template for pattern formation that was discovered by the famous mathematician Alan Turing.
    Flagellar undulations make stripe patterns in space-time, generating waves that travel along the tail to drive the sperm and microbes forward.
    Alan Turing is most well-known for helping to break the enigma code during WWII. However he also developed a theory of pattern formation that predicted that chemical patterns may appear spontaneously with only two ingredients: chemicals spreading out (diffusing) and reacting together. Turing first proposed the so-called reaction-diffusion theory for pattern formation.
    Turing helped to pave the way for a whole new type of enquiry using reaction-diffusion mathematics to understand natural patterns. Today, these chemical patterns first envisioned by Turing are called Turing patterns. Although not yet proven by experimental evidence, these patterns are thought to govern many patterns across nature, such as leopard spots, the whorl of seeds in the head of a sunflower, and patterns of sand on the beach. Turing’s theory can be applied to various fields, from biology and robotics to astrophysics.
    Mathematician Dr Hermes Gadêlha, head of the Polymaths Lab, and his PhD student James Cass conducted this research in the School of Engineering Mathematics and Technology at the University of Bristol. Gadêlha explained: “Live spontaneous motion of flagella and cilia is observed everywhere in nature, but little is known about how they are orchestrated.
    “They are critical in health and disease, reproduction, evolution, and survivorship of almost every aquatic microorganism in earth.”
    The team was inspired by recent observations in low viscosity fluids that the surrounding environment plays a minor role on the flagellum. They used mathematical modelling, simulations, and data fitting to show that flagellar undulations can arise spontaneously without the influence of their fluid environment. More

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    Revolutionary breakthrough: Human stomach micro-physiological system unveiled

    A groundbreaking development in biomedical engineering has led to the creation of a human stomach micro-physiological system (hsMPS), representing a significant leap forward in understanding and treating various gastrointestinal diseases, including stomach cancer. The research team, led by Professor Tae-Eun Park from the Department of Biomedical Engineering at UNIST and Professor Seong-Ho Kong from Seoul National University Hospital, has successfully developed a biomimetic chip that combines organoid and organ-on-a-chip technologies to simulate the complex defense mechanisms of the human gastric mucosa.
    Organoids, which mimic human organs using stem cells, have shown great potential as in vitro models for studying specific functions. However, they lack the ability to replicate mechanical stimulation or cell-to-cell interactions found within the human body. This limitation prompted researchers to develop an innovative biochip capable of recreating real-life gastric mucosal protection systems.
    The newly developed biochip incorporates fluid flow within its microfluidic channels to simulate mechanical stimuli and facilitate cell-to-cell interactions. Mesenchymal substrate cells exposed to fluid flow activate gastric stem cell proliferation while promoting cellular differentiation balance. This process ultimately mimics key features necessary for developing functional gastric mucosal barriers at a biologically relevant level.
    One remarkable achievement demonstrated by this hsMPS is its ability to uncover previously unseen defense mechanisms against Helicobacter pylori — a pathogen associated with various stomach diseases — in ways that were not possible with existing models. Gastric mucosal peptide known as TFF1 was observed forming mosaic-like structures within groups infected with Helicobacter pylori — forming a protective barrier essential for establishing an efficient defense system against external infectious factors. Suppression of gastric mucosal peptide expression resulted in more severe inflammatory reactions.
    “This study presents our model’s potential for observing dynamic interactions between epithelial cells and immune cells in chips infected with Helicobacter pylori, contributing to a comprehensive understanding of gastric mucosal barrier stability,” explained Professor Park.
    The research findings, supported by the Basic Research Laboratory (BRL) research grant from the National Research (NRF), funded by the Ministry of Science and ICT (MSIT), have been published online on July 31 in Advanced Science.
    These groundbreaking advancements in hsMPS open up new avenues for studying host-microbe interactions, developing therapeutic strategies for gastric infections, and gaining a deeper understanding of gastrointestinal diseases. This innovative biochip technology has the potential to reduce reliance on animal experimentation while providing valuable insights into complex physiological processes within the human stomach. More

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    Powering the quantum revolution: Quantum engines on the horizon

    Quantum mechanics is a branch of physics that explores the properties and interactions of iparticles at very small scale, such as atoms and molecules. This has led to the development of new technologies that are more powerful and efficient compared to their conventional counterparts, causing breakthroughs in areas such as computing, communication, and energy.
    At the Okinawa Institute of Science and Technology (OIST), researchers at the Quantum Systems Unit have collaborated with scientists from the University of Kaiserslautern-Landau and the University of Stuttgart to design and build an engine that is based on the special rules that particles obey at very small scales.
    They have developed an engine that uses the principles of quantum mechanics to create power, instead of the usual way of burning fuel. The paper describing these results is co-authored by OIST researchers Keerthy Menon, Dr. Eloisa Cuestas, Dr. Thomas Fogarty and Prof. Thomas Busch and has been published in the journal Nature.
    In a classical car engine, usually a mixture of fuel and air is ignited inside a chamber. The resulting explosion heats the gas in the chamber, which in turn pushes a piston in and out, producing work that turns the wheels of the car.
    In their quantum engine the scientists have replaced the use of heat with a change in the quantum nature of the particles in the gas. To understand how this change can power the engine, we need to know that all particles in nature can be classified as either bosons or fermions, based on their special quantum characteristics.
    At very low temperatures, where quantum effects become important, bosons have a lower energy state than fermions, and this energy difference can be used to power an engine. Instead of heating and cooling a gas cyclically like a classical engine does, the quantum engine works by changing bosons into fermions and back again.
    “To turn fermions into bosons, you can take two fermions and combine them into a molecule. This new molecule is a boson. Breaking it up allows us to retrieve the fermions again. By doing this cyclically, we can power the engine without using heat,” Prof. Thomas Busch, leader of the Quantum Systems Unit explained. More

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    Making a femtosecond laser out of glass

    Is it possible to make a femtosecond laser entirely out of glass? That’s the rabbit hole that Yves Bellouard, head of EPFL’s Galatea Laboratory, went down after years of spending hours — and hours — aligning femtosecond lasers for lab experiments.
    The Galatea laboratory is at the crossroads between optics, mechanics and materials science, and femtosecond lasers is a crucial element of Bellouard’s work. Femtosecond lasers produce extremely short and regular bursts of laser light and have many applications such as laser eye surgery, non-linear microscopy, spectroscopy, laser material processing and recently, sustainable data storage. Commercial femtosecond lasers are made by putting optical components and their mounts on a substrate, typically optical breadboards, which requires fastidious alignment of the optics.
    “We use femtosecond lasers for our research on the non-linear properties of materials and how materials can be modified in their volume,” explains Bellouard. “Going through the exercise of painful complex optical alignments makes you dream of simpler and more reliable ways to align complex optics.”
    Bellouard and his team’s solution? Use a commercial femtosecond laser to make a femtosecond laser out of glass, no bigger than the size of a credit card, and with less alignment hassles. The results are published in the journal Optica.
    How to make a femtosecond laser out of glass
    To make a femtosecond laser using a glass substrate, the scientists start with a sheet of glass. “We want to make stable lasers, so we use glass because it has a lower thermal expansion than conventional substrates, it is a stable material and transparent for the laser light we use,” Bellouard explains.
    Using a commercial femtosecond laser, the scientists etch out special grooves in the glass that allow for the precise placement of the essential components of their laser. Even at micron level precision fabrication, the grooves and the components are not sufficiently precise by themselves to reach laser quality alignment. In other words, the mirrors are not yet perfectly aligned, so at this stage, their glass device is not yet functional as a laser. More

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    Unleashing the power of AI to track animal behavior

    Movement offers a window into how the brain operates and controls the body. From clipboard-and-pen observation to modern artificial intelligence-based techniques, tracking human and animal movement has come a long way. Current cutting-edge methods utilize artificial intelligence to automatically track parts of the body as they move. However, training these models is still time-intensive and limited by the need for researchers to manually mark each body part hundreds to thousands of times.
    Now, Associate Professor Eiman Azim and team have created GlowTrack, a non-invasive movement tracking method that uses fluorescent dye markers to train artificial intelligence. GlowTrack is robust, time-efficient, and high definition — capable of tracking a single digit on a mouse’s paw or hundreds of landmarks on a human hand.
    The technique, published in Nature Communications on September 26, 2023, has applications spanning from biology to robotics to medicine and beyond.
    “Over the last several years, there has been a revolution in tracking behavior as powerful artificial intelligence tools have been brought into the laboratory,” says Azim, senior author and holder of the William Scandling Developmental Chair. “Our approach makes these tools more versatile, improving the ways we capture diverse movements in the laboratory. Better quantification of movement gives us better insight into how the brain controls behavior and could aid in the study of movement disorders like amyotrophic lateral sclerosis (ALS) and Parkinson’s disease.”
    Current methods to capture animal movement often require researchers to manually and repeatedly mark body parts on a computer screen — a time-consuming process subject to human error and time constraints. Human annotation means that these methods can usually only be used in a narrow testing environment, since artificial intelligence models specialize to the limited amount of training data they receive. For example, if the light, orientation of the animal’s body, camera angle, or any number of other factors were to change, the model would no longer recognize the tracked body part.
    To address these limitations, the researchers used fluorescent dye to label parts of the animal or human body. With these “invisible” fluorescent dye markers, an enormous amount of visually diverse data can be created quickly and fed into the artificial intelligence models without the need for human annotation. Once fed this robust data, these models can be used to track movements across a much more diverse set of environments and at a resolution that would be far more difficult to achieve with manual human labeling.
    This opens the door for easier comparison of movement data between studies, as different laboratories can use the same models to track body movement across a variety of situations. According to Azim, comparison and reproducibility of experiments are essentialin the process of scientific discovery. More

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    One-hour training is all you need to control a third robotic arm, study finds

    One-hour training is enough for people to carry a task alone with their supernumerary robotic arms as effectively as with a partner, study finds.
    A new study by researchers at Queen Mary University of London, Imperial College London and The University of Melbourne has found that people can learn to use supernumerary robotic arms as effectively as working with a partner in just one hour of training.
    The study, published in the journal IEEE Open Journal of Engineering in Medicine and Biology, investigated the potential of supernumerary robotic arms to help people perform tasks that require more than two hands. The idea of human augmentation with additional artificial limbs has long been in science fiction, like in Doctor Octopus in The Amazing Spider-Man (1963).
    “Many tasks in daily life, such as opening a door while carrying a big package, require more than two hands,” said Dr Ekaterina Ivanova, lead author of the study from Queen Mary University of London. “Supernumerary robotic arms have been proposed as a way to allow people to do these tasks more easily, but until now, it was not clear how easy they would be to use.”
    The study involved 24 participants who were asked to perform a variety of tasks with a supernumerary robotic arm. The participants were either given one hour of training in how to use the arm, or they were asked to work with a partner.
    The results showed that the participants who had received training on the supernumerary arm performed the tasks just as well as the participants who were working with a partner. This suggests that supernumerary robotic arms can be a viable alternative to working with a partner, and that they can be learned to use effectively in a relatively short amount of time.
    “Our findings are promising for the development of supernumerary robotic arms,” said Dr Ivanova. “They suggest that these arms could be used to help people with a variety of tasks, such as surgery, industrial work, or rehabilitation.”
    The study was funded by the EU H2020 NIMA (FETOPEN 899626), TRIMANUAL (MSCA 843408) and CONBOTS (ICT 871803) grants. More